Detailed information of SNP:
|
SNP ID:
sf0527331360(Gbrowse)
Chromosome: chr05 Position: 27331360 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.83% | 31.17% |
| All Indica | 799 | 68.59% | 31.41% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527331360 | G->A | INTERGENIC | None |