Detailed information of SNP:
|
SNP ID:
sf0527333692(Gbrowse)
Chromosome: chr05 Position: 27333692 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 72.76% | 27.24% |
| All Indica | 798 | 68.55% | 31.45% |
| All Japonica | 496 | 77.22% | 22.78% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 74.33% | 25.67% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527333692 | G->C | INTERGENIC | None |