Detailed information of SNP:
|
SNP ID:
sf0527342813(Gbrowse)
Chromosome: chr05 Position: 27342813 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.53% | 8.47% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527342813 | A->G | INTERGENIC | None |