Detailed information of SNP:
|
SNP ID:
sf0527368320(Gbrowse)
Chromosome: chr05 Position: 27368320 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 54.06% | 45.94% |
| All Indica | 796 | 84.67% | 15.33% |
| All Japonica | 497 | 11.07% | 88.93% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527368320 | C->T | INTERGENIC | None |