Detailed information of SNP:
|
SNP ID:
sf0527392377(Gbrowse)
Chromosome: chr05 Position: 27392377 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 97.77% | 2.23% |
| All Indica | 727 | 96.97% | 3.03% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 97.41% | 2.59% |
| Indica II | 203 | 97.54% | 2.46% |
| Indica Intermediate | 177 | 95.48% | 4.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527392377 | A->T | INTERGENIC | None |