Detailed information of SNP:
|
SNP ID:
sf0527514893(Gbrowse)
Chromosome: chr05 Position: 27514893 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.23% | 48.77% |
| All Indica | 799 | 76.47% | 23.53% |
| All Japonica | 497 | 17.10% | 82.90% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527514893 | A->T | INTERGENIC | None |