Detailed information of SNP:
|
SNP ID:
sf0527516911(Gbrowse)
Chromosome: chr05 Position: 27516911 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.67% | 49.33% |
| All Indica | 795 | 75.97% | 24.03% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 82.80% | 17.20% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527516911 | C->T | INTERGENIC | None |