Detailed information of SNP:
|
SNP ID:
sf0527547231(Gbrowse)
Chromosome: chr05 Position: 27547231 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.14% | 5.86% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527547231 | C->T | LOC_Os05g48170(LOC_Os05g48170.1) | Non-Synonymous SNP |