Detailed information of SNP:
|
SNP ID:
sf0527710773(Gbrowse)
Chromosome: chr05 Position: 27710773 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 56.61% | 43.39% |
| All Indica | 789 | 87.20% | 12.80% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527710773 | T->G | INTERGENIC | None |