Detailed information of SNP:
|
SNP ID:
sf0527738081(Gbrowse)
Chromosome: chr05 Position: 27738081 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1201 | 91.59% | 8.41% |
| All Indica | 596 | 84.06% | 15.94% |
| All Japonica | 487 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 249 | 79.92% | 20.08% |
| Indica II | 180 | 88.89% | 11.11% |
| Indica Intermediate | 167 | 85.03% | 14.97% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 97.65% | 2.35% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527738081 | A->T | INTERGENIC | None |