Detailed information of SNP:
|
SNP ID:
sf0527767179(Gbrowse)
Chromosome: chr05 Position: 27767179 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.42% | 43.58% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527767179 | T->A | INTERGENIC | None |