Detailed information of SNP:
|
SNP ID:
sf0527823547(Gbrowse)
Chromosome: chr05 Position: 27823547 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 92.85% | 7.15% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 61.90% | 38.10% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527823547 | T->C | INTERGENIC | None |