Detailed information of SNP:
|
SNP ID:
sf0527840188(Gbrowse)
Chromosome: chr05 Position: 27840188 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 67.39% | 32.61% |
| All Indica | 792 | 43.69% | 56.31% |
| All Japonica | 473 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 56 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527840188 | G->A | INTERGENIC | None |