Detailed information of SNP:
|
SNP ID:
sf0527847990(Gbrowse)
Chromosome: chr05 Position: 27847990 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.70% | 15.30% |
| All Indica | 798 | 84.84% | 15.16% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527847990 | G->A | INTERGENIC | None |