Detailed information of SNP:
|
SNP ID:
sf0527848985(Gbrowse)
Chromosome: chr05 Position: 27848985 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.09% | 28.91% |
| All Indica | 798 | 62.03% | 37.97% |
| All Japonica | 497 | 81.89% | 18.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527848985 | T->C | LOC_Os05g48700(LOC_Os05g48700.1) | INTRON |