Detailed information of SNP:
|
SNP ID:
sf0527849280(Gbrowse)
Chromosome: chr05 Position: 27849280 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.38% | 29.62% |
| All Indica | 799 | 62.20% | 37.80% |
| All Japonica | 497 | 81.89% | 18.11% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527849280 | C->T | LOC_Os05g48700(LOC_Os05g48700.1) | INTRON |