Detailed information of SNP:
|
SNP ID:
sf0527859094(Gbrowse)
Chromosome: chr05 Position: 27859094 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 57.50% | 42.50% |
| All Indica | 787 | 38.25% | 61.75% |
| All Japonica | 491 | 94.70% | 5.30% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 11.80% | 88.20% |
| Indica II | 205 | 88.78% | 11.22% |
| Indica Intermediate | 209 | 35.89% | 64.11% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527859094 | G->A | LOC_Os05g48710(LOC_Os05g48710.1) | Non-Synonymous SNP |