Detailed information of SNP:
|
SNP ID:
sf0527859313(Gbrowse)
Chromosome: chr05 Position: 27859313 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 62.36% | 37.64% |
| All Indica | 796 | 39.45% | 60.55% |
| All Japonica | 489 | 98.36% | 1.64% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527859313 | G->A | LOC_Os05g48710(LOC_Os05g48710.1) | Non-Synonymous SNP |