Detailed information of SNP:
|
SNP ID:
sf0527859353(Gbrowse)
Chromosome: chr05 Position: 27859353 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 61.14% | 38.86% |
| All Indica | 788 | 39.09% | 60.91% |
| All Japonica | 490 | 95.31% | 4.69% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 204 | 89.22% | 10.78% |
| Indica Intermediate | 209 | 36.84% | 63.16% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527859353 | A->G | LOC_Os05g48710(LOC_Os05g48710.1) | Non-Synonymous SNP |