Detailed information of SNP:
|
SNP ID:
sf0527861914(Gbrowse)
Chromosome: chr05 Position: 27861914 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 63.37% | 36.63% |
| All Indica | 795 | 89.06% | 10.94% |
| All Japonica | 496 | 18.95% | 81.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 210 | 78.57% | 21.43% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527861914 | C->A | LOC_Os05g48720(LOC_Os05g48720.1) | Non-Synonymous SNP |