Detailed information of SNP:
|
SNP ID:
sf0527862850(Gbrowse)
Chromosome: chr05 Position: 27862850 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 63.12% | 36.88% |
| All Indica | 785 | 89.81% | 10.19% |
| All Japonica | 494 | 18.02% | 81.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527862850 | G->A | LOC_Os05g48720(LOC_Os05g48720.1) | INTRON |