Detailed information of SNP:
|
SNP ID:
sf0527864103(Gbrowse)
Chromosome: chr05 Position: 27864103 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 54.84% | 45.16% |
| All Indica | 792 | 30.18% | 69.82% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 43 | 30.23% | 69.77% |
| Indica I | 375 | 5.87% | 94.13% |
| Indica II | 209 | 78.95% | 21.05% |
| Indica Intermediate | 208 | 25.00% | 75.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527864103 | A->G | LOC_Os05g48720(LOC_Os05g48720.1) | Synonymous |