Detailed information of SNP:
|
SNP ID:
sf0527864269(Gbrowse)
Chromosome: chr05 Position: 27864269 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.43% | 33.57% |
| All Indica | 796 | 93.59% | 6.41% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527864269 | T->C | INTERGENIC | None |