Detailed information of SNP:
|
SNP ID:
sf0527866019(Gbrowse)
Chromosome: chr05 Position: 27866019 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 60.25% | 39.75% |
| All Indica | 794 | 37.15% | 62.85% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 209 | 35.89% | 64.11% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527866019 | C->T | INTERGENIC | None |