Detailed information of SNP:



SNP ID: sf0527880097(Gbrowse)

Chromosome: chr05

Position: 27880097
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1396 61.82% 38.18%
All Indica777 35.91% 64.09%
All Japonica497 95.37% 4.63%
Aus67 100.00% 0.00%
Indica I365 17.26% 82.74%
Indica II208 67.79% 32.21%
Indica Intermediate204 36.76% 63.24%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 80.88% 19.12%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 70.73% 29.27%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0527880097 T->C INTERGENIC None