Detailed information of SNP:
|
SNP ID:
sf0527880097(Gbrowse)
Chromosome: chr05 Position: 27880097 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 61.82% | 38.18% |
| All Indica | 777 | 35.91% | 64.09% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 17.26% | 82.74% |
| Indica II | 208 | 67.79% | 32.21% |
| Indica Intermediate | 204 | 36.76% | 63.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527880097 | T->C | INTERGENIC | None |