Detailed information of SNP:
|
SNP ID:
sf0527908761(Gbrowse)
Chromosome: chr05 Position: 27908761 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1263 | 83.45% | 16.55% |
| All Indica | 795 | 95.22% | 4.78% |
| All Japonica | 348 | 55.17% | 44.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 203 | 46.31% | 53.69% |
| Tropical Japonica | 90 | 84.44% | 15.56% |
| Japonica Intermediate | 55 | 40.00% | 60.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527908761 | G->A | INTERGENIC | None |