Detailed information of SNP:



SNP ID: sf0527955271(Gbrowse)

Chromosome: chr05

Position: 27955271
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 58.42% 41.58%
All Indica799 89.74% 10.26%
All Japonica497 4.23% 95.77%
Aus67 98.51% 1.49%
Indica I375 96.00% 4.00%
Indica II213 76.53% 23.47%
Indica Intermediate211 91.94% 8.06%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 6.38% 93.62%
Japonica Intermediate68 17.65% 82.35%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0527955271 G->A INTERGENIC None