Detailed information of SNP:
|
SNP ID:
sf0527963880(Gbrowse)
Chromosome: chr05 Position: 27963880 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 53.12% | 46.88% |
| All Indica | 790 | 81.14% | 18.86% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 212 | 48.11% | 51.89% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527963880 | A->G | INTERGENIC | None |