Detailed information of SNP:
|
SNP ID:
sf0527968247(Gbrowse)
Chromosome: chr05 Position: 27968247 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 798 | 25.56% | 74.44% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 2.41% | 97.59% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527968247 | C->G | INTERGENIC | None |