Detailed information of SNP:
|
SNP ID:
sf0527968615(Gbrowse)
Chromosome: chr05 Position: 27968615 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.13% | 48.87% |
| All Indica | 798 | 25.81% | 74.19% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 2.94% | 97.06% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527968615 | C->G | INTERGENIC | None |