Detailed information of SNP:
|
SNP ID:
sf0527969657(Gbrowse)
Chromosome: chr05 Position: 27969657 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.03% | 43.97% |
| All Indica | 799 | 26.16% | 73.84% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527969657 | G->A | INTERGENIC | None |