Detailed information of SNP:
|
SNP ID:
sf0527971660(Gbrowse)
Chromosome: chr05 Position: 27971660 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.32% | 46.68% |
| All Indica | 796 | 21.73% | 78.27% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 2.67% | 97.33% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 208 | 22.60% | 77.40% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527971660 | T->G | INTERGENIC | None |