Detailed information of SNP:
|
SNP ID:
sf0527976654(Gbrowse)
Chromosome: chr05 Position: 27976654 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 84.91% | 15.09% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 476 | 59.03% | 40.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 41.59% | 58.41% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0527976654 | T->C | LOC_Os05g48870(LOC_Os05g48870.9) | UTR_3_PRIME |
| sf0527976654 | T->C | LOC_Os05g48870(LOC_Os05g48870.8) | UTR_3_PRIME |
| sf0527976654 | T->C | LOC_Os05g48870(LOC_Os05g48870.7) | UTR_3_PRIME |
| sf0527976654 | T->C | LOC_Os05g48870(LOC_Os05g48870.5) | UTR_3_PRIME |
| sf0527976654 | T->C | LOC_Os05g48870(LOC_Os05g48870.6) | UTR_3_PRIME |
| sf0527976654 | T->C | LOC_Os05g48870(LOC_Os05g48870.1) | UTR_3_PRIME |