Detailed information of SNP:
|
SNP ID:
sf0528000634(Gbrowse)
Chromosome: chr05 Position: 28000634 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.04% | 32.96% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528000634 | G->A | INTERGENIC | None |