Detailed information of SNP:
|
SNP ID:
sf0528032439(Gbrowse)
Chromosome: chr05 Position: 28032439 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.60% | 49.40% |
| All Indica | 795 | 17.61% | 82.39% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 0.53% | 99.47% |
| Indica II | 210 | 51.43% | 48.57% |
| Indica Intermediate | 210 | 14.29% | 85.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528032439 | C->T | INTERGENIC | None |