Detailed information of SNP:
|
SNP ID:
sf0528034470(Gbrowse)
Chromosome: chr05 Position: 28034470 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.81% | 37.19% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528034470 | A->C | INTERGENIC | None |