Detailed information of SNP:
|
SNP ID:
sf0528034519(Gbrowse)
Chromosome: chr05 Position: 28034519 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 93.50% | 6.50% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 35 | 91.43% | 8.57% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528034519 | G->A | INTERGENIC | None |