Detailed information of SNP:
|
SNP ID:
sf0528041893(Gbrowse)
Chromosome: chr05 Position: 28041893 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 95.62% | 4.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 472 | 87.08% | 12.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 83.76% | 16.24% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528041893 | G->A | LOC_Os05g48990(LOC_Os05g48990.1) | Non-Synonymous SNP |