Detailed information of SNP:
|
SNP ID:
sf0528083857(Gbrowse)
Chromosome: chr05 Position: 28083857 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 82.14% | 17.86% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 436 | 52.29% | 47.71% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 290 | 31.38% | 68.62% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 83.02% | 16.98% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528083857 | T->C | INTERGENIC | None |