Detailed information of SNP:
|
SNP ID:
sf0528102377(Gbrowse)
Chromosome: chr05 Position: 28102377 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.95% | 33.05% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528102377 | A->G | LOC_Os05g49110(LOC_Os05g49110.1) | Non-Synonymous SNP |