Detailed information of SNP:
|
SNP ID:
sf0528119307(Gbrowse)
Chromosome: chr05 Position: 28119307 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 59.46% | 40.54% |
| All Indica | 777 | 91.51% | 8.49% |
| All Japonica | 496 | 18.95% | 81.05% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 366 | 92.08% | 7.92% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 201 | 94.53% | 5.47% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528119307 | C->T | LOC_Os05g49120(LOC_Os05g49120.2) | UTR_3_PRIME |
| sf0528119307 | C->T | LOC_Os05g49120(LOC_Os05g49120.1) | UTR_3_PRIME |