Detailed information of SNP:
|
SNP ID:
sf0528124419(Gbrowse)
Chromosome: chr05 Position: 28124419 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.34% | 35.66% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528124419 | C->T | LOC_Os05g49130(LOC_Os05g49130.2) | INTRON |
| sf0528124419 | C->T | LOC_Os05g49130(LOC_Os05g49130.1) | UTR_3_PRIME |