Detailed information of SNP:
|
SNP ID:
sf0528133960(Gbrowse)
Chromosome: chr05 Position: 28133960 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 95.39% | 4.61% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 492 | 92.48% | 7.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 62.64% | 37.36% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528133960 | C->T | INTERGENIC | None |