Detailed information of SNP:
|
SNP ID:
sf0528155939(Gbrowse)
Chromosome: chr05 Position: 28155939 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 87.62% | 12.38% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 427 | 63.00% | 37.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 277 | 50.90% | 49.10% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 61.40% | 38.60% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528155939 | T->C | INTERGENIC | None |