Detailed information of SNP:
|
SNP ID:
sf0528216536(Gbrowse)
Chromosome: chr05 Position: 28216536 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 87.47% | 12.53% |
| All Indica | 667 | 77.51% | 22.49% |
| All Japonica | 477 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 293 | 86.35% | 13.65% |
| Indica II | 191 | 79.06% | 20.94% |
| Indica Intermediate | 183 | 61.75% | 38.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528216536 | C->T | LOC_Os05g49290(LOC_Os05g49290.2) | INTRON |
| sf0528216536 | C->T | LOC_Os05g49290(LOC_Os05g49290.3) | UTR_3_PRIME |
| sf0528216536 | C->T | LOC_Os05g49290(LOC_Os05g49290.1) | UTR_3_PRIME |