Detailed information of SNP:
|
SNP ID:
sf0528262878(Gbrowse)
Chromosome: chr05 Position: 28262878 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 94.06% | 5.94% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 459 | 83.44% | 16.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 80.40% | 19.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528262878 | C->T | LOC_Os05g49390(LOC_Os05g49390.1) | INTRON |