Detailed information of SNP:
|
SNP ID:
sf0528263453(Gbrowse)
Chromosome: chr05 Position: 28263453 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 94.24% | 5.76% |
| All Indica | 778 | 96.27% | 3.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 20.69% | 79.31% |
| Indica I | 364 | 95.33% | 4.67% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528263453 | C->T | INTERGENIC | None |