Detailed information of SNP:
|
SNP ID:
sf0528278675(Gbrowse)
Chromosome: chr05 Position: 28278675 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 79.11% | 20.89% |
| All Indica | 792 | 74.49% | 25.51% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 205 | 75.61% | 24.39% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528278675 | G->A | INTERGENIC | None |