Detailed information of SNP:
|
SNP ID:
sf0528285703(Gbrowse)
Chromosome: chr05 Position: 28285703 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.65% | 21.35% |
| All Indica | 799 | 74.09% | 25.91% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528285703 | C->T | INTERGENIC | None |