Detailed information of SNP:
|
SNP ID:
sf0528339801(Gbrowse)
Chromosome: chr05 Position: 28339801 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 56.39% | 43.61% |
| All Indica | 787 | 80.94% | 19.06% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 12 | 58.33% | 41.67% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528339801 | A->T | INTERGENIC | None |